Single Omics alignment

• Alignment tutorial for 8months mouse brains
  • Loading package
  • Loading and Pre-processing two slices
  • Constructing neighbor graph and training the Pointnet++Encoder
  • Constructing neighbor graph and training the Pointnet++Encoder
  • Target alignment slice
  • Source alignment slice
  • Training the optimal transport module
  • Visualize and quantify the evaluation of seven region alignment results
  • The alignment result of Alveus
• Alignment tutorial for 151673 and 151674 from DLPFC
  • Loading package
  • Loading and Pre-processing two slices from 151673 and 151674
  • Constructing neighbor graph and training the Pointnet++Encoder
  • Constructing neighbor graph and training the Pointnet++Encoder
  • Source align slice truth
  • Target align slice truth
  • Training the optimal transport module
  • Visualize and quantify the evaluation of seven region alignment results
  • Layer_1 alignment result
  • Layer_2 alignment result
  • Layer_3 alignment result
  • Layer_4 alignment result
• Alignment tutorial for two E15.5 Stereo-seq mouse embryo slices
  • Loading package
  • Loading and Pre-processing two E15.5 Stereo-seq slices
  • Constructing neighbor graph and training the Pointnet++Encoder
  • Constructing neighbor graph and training the Pointnet++Encoder
  • Training the optimal transport module
  • Source alignment slice
  • Target alignment slice
  • Visualize and quantify the evaluation of seven region alignment results