Installation

System Requirements

lib_3d_OT package requires only a standard computer with enough RAM to support the in-memory operations.

This package is supported for Linux. The package has been tested on the following systems:

lib_3d_OT mainly depends on the Python(>=3.10.13) scientific stack.

For specific setting, please see requirements.txt.

We need your environment to have R(>=4.3.1) and mclust(6.1.1) package installed.

git clone https://github.com/dbjzs/3d-OT.git
cd 3d-OT

3d-OT is available for Python 3.10. We recommend training 3d-OT models on a device with GPU support.

Using the conda install environment:

conda create -n 3d-OT -c conda-forge python==3.10.13 libopenblas=0.3.25 r-base=4.3.1 r-mclust -y
conda activate 3d-OT

Then install 3d-OT using pip:

pip install -r requirements.txt
pip install .

pip install ipykernel
python -m ipykernel install --user --name=3d-OT --display-name="Python (3d-OT)"

Please use the kernel name as follows: Python [conda env:3d-OT]